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Messages from ultrahigh resolution crystal structures
Authors:Sonia Longhi  Mirjam Czjzek  Christian Cambillau
Institution:Laboratoire d'Architecture et Fonction de Macromolécules Biologiques (AFMB), CNRS-UPR9039, IBSM, 31 Chemin Joseph-Aiguier, 13402 Marseille cedex 20, France
Abstract:The ever growing availability of macromolecular crystal structures determined at atomic resolution has now reached a critical size, making it possible to obtain statistically unbiased data on both protein stereochemistry and the validity of the parameters used in their refinement. Besides the determination of the precise geometry of proteins and their active sites, high resolution structures have made it possible to check the application of normal mode calculations, to calculate charge density distributions and to analyze hydration shells around protein molecules. Even if only a few structures involve protein complexes, either with ligands or prosthetic groups, the information obtained in these cases is of great interest for obtaining the physical parameters of these interactions.
Keywords:Abbreviations: BPTI bovine pancreatic trypsin inhibitor  FAD flavin adenine dinucleotide  FMN flavin mononucleotide  MD molecular dynamics  NAD nicotinamide adenine dinucleotide  PDB Protein Data Bank
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