Comparison of chicken erythroid cell nuclear isolation methods using morphological,immunochemical and biochemical criteria

Chicken erythroid nuclei were prepared using four published methods. Our findings indicate that nuclei prepared by nitrogen cavitation are less likely to be contaminated with plasma membrane fragments than those made by procedures involving cell disruption by hypotonic lysis. However, globin gene sequences were much less sensitive to DNase I digestion in nuclei prepared by nitrogen cavitation. This suggests that the conformation of chromatin was altered by the cavitation procedure. Analysis of the proteins solubilized during limited DNase I digestion of nuclei prepared by both hypotonic lysis and cavitation revealed no appreciable differences in HMG proteins but a notable difference in the RNP-associated proteins and core histones.Abbreviations HMG high mobility group nonhistone chromosomal protein - RNP ribonucleoprotein - SSC 14 mM sodium citrate buffered saline pH 7.0 - PMSF phenylmethanesulfonyl fluoride - EDTA ethylenediaminetetraacetic acid - DTT dithiothreitol - PBS 10 mM sodium phosphate buffered saline pH 7.2 - NP-40 Nonidet P-40 (octylphenoxypolyethoxyethanol) - SS-DNA single-stranded DNA - RSB reticulocyte standard buffer, 0.01 M NaCl, 0.003 M MgCl₂, 0.01 M Tris-HCI, pH 7.4.