Parallel tempering simulations of HP-36 |
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Authors: | Lin Chai-Yu Hu Chin-Kun Hansmann Ulrich H E |
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Affiliation: | Institute of Physics, Academia Sinica, Taipei, Taiwan. |
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Abstract: | We report results from all-atom Monte Carlo simulations of the 36-residue villin headpiece subdomain HP-36. Protein-solvent interactions are approximated by an implicit solvent model. The parallel tempering is used to overcome the problem of slow convergence in low-temperature protein simulations. Our results show that this technique allows one to sample native-like structures of small proteins and points out the need for improved energy functions. |
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Keywords: | protein‐folding problem structure prediction Monte Carlo simulation implicit solvent |
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