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Parallel tempering simulations of HP-36
Authors:Lin Chai-Yu  Hu Chin-Kun  Hansmann Ulrich H E
Affiliation:Institute of Physics, Academia Sinica, Taipei, Taiwan.
Abstract:We report results from all-atom Monte Carlo simulations of the 36-residue villin headpiece subdomain HP-36. Protein-solvent interactions are approximated by an implicit solvent model. The parallel tempering is used to overcome the problem of slow convergence in low-temperature protein simulations. Our results show that this technique allows one to sample native-like structures of small proteins and points out the need for improved energy functions.
Keywords:protein‐folding problem  structure prediction  Monte Carlo simulation  implicit solvent
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