基于高通量测序的缢蛏及其养殖池塘菌群结构的季节变化

为探究缢蛏养殖过程中养殖环境和缢蛏体内的细菌群落结构季节变化特征及其与环境因子的相关性,采用高通量测序技术对缢蛏养殖池塘的水体、沉积物及缢蛏内脏团细菌菌群进行了研究.结果表明: 水体中冬季的细菌菌群结构与其他3季差异显著,沉积物和缢蛏内脏团4季的细菌菌群结构均无显著差异.水体各季节细菌群落的Shannon多样性指数无明显差异,沉积物及缢蛏内脏团细菌群落Shannon多样性指数夏季最低,冬季最高.门水平上,蓝细菌门、变形菌门和拟杆菌门为水体的优势菌群;变形菌门、绿弯菌门和拟杆菌门为沉积物的优势菌群;柔膜菌门和变形菌门为缢蛏内脏团的优势菌群.属水平上,水体冬季的优势菌属为NS3a_marine_group,而其余3季为聚球藻属;沉积物优势菌属为厌氧绳菌科下的一类菌属norank_f_Anaerolineacea和硝化螺旋菌属;内脏团优势菌属为支原体属和弓形菌属.环境因子与菌群的相关性分析表明: 水体的优势菌属聚球藻属与水温、化学需氧量(COD)、PO₄^--P、NH₄⁺-N、pH和透明度呈正相关;沉积物的优势菌属厌氧绳菌科菌属norank_f_Anaerolineacea与COD、水温、总磷呈正相关;缢蛏内脏团的优势菌属支原体属与水温、pH、NH₄⁺-N、PO₄^--P和透明度呈正相关.这表明不同季节的缢蛏养殖池塘及缢蛏体内细菌群落结构及多样性差异较大,水体细菌菌群受养殖环境的影响明显,尤其是水温及氮磷含量.

Seasonal variation of microflora in Sinonovacula constricta and its aquacultural pond based on high-throughput sequencing

In order to explore the seasonal changes of the bacterial community structure and the interaction of environmental factors in Sinonovacula constricta ponds, we used high throughput sequencing technology to examine the bacteria of water, sediment, and viscera. The results showed that microflora structure of water samples in winter was significantly different from that in spring, summer and autumn, while there was no significant difference in bacterial community structure of sediment and viscera in different seasons. There was no significant difference of Shannon diversity index in water across different seasons. The Shannon diversity index of sediment and viscera was the lowest in summer and the highest in winter. At the phylum level, Cyanobacteria, Proteobacteria and Tenericutes were the most predominant bacteria in water, sediment, and viscera, respectively. At the genus level, NS3a_marine_group was predominant in winter water, and Synechococcus in the other three seasons. By contrast, dominant bacteria in sediments were norank_f_Anaerolineacea and Nitrospira, and Mycoplasma and Arcobacter were the most abundant bacterial genera in viscera. Synechococcus had a positive correlation with water temperature, COD, PO₄^--P, NH₄⁺-N, pH, and transparency. The norank_f_Anaerolineacea was positively correlated with water temperature, COD, and TP. Mycoplasma was positively correlated with water temperature, PO₄^--P, NH₄⁺-N, pH, and transparency. Our results suggest that there were significant differences in the composition and diversity of microflora of S. constricta and ponds in different seasons. Bacteria in water was obviously affected by various environmental factors, especially water temperature and the concentrations of nitrogen and phosphorus.