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Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD,the Cα‐dehydrogenase from Sphingobium sp. strain SYK‐6
Authors:Yuki Tobimatsu  Yasuyuki Ishikawa  Clifton E. Foster  Naofumi Kamimura  Shojiro Hishiyama  Saki Hashimoto  Amiu Shino  Hirofumi Hara  Kanna Sato‐Izawa  Paula Oyarce  Geert Goeminne  Kris Morreel  Jun Kikuchi  Toshiyuki Takano  Masao Fukuda  Yoshihiro Katayama  Wout Boerjan  John Ralph  Eiji Masai  Shinya Kajita
Affiliation:1. Department of Biochemistry, University of Wisconsin, Madison, WI, USA;2. US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, WI, USA;3. Graduate School of Bio‐Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan;4. Michigan State University, East Lansing, MI, USA;5. Department of Bioengineering, Nagaoka University of Technology, Niigata, Japan;6. Forestry and Forest Products Research Institute, Ibaraki, Japan;7. Center for Sustainable Resource Science, RIKEN, Kanagawa, Japan;8. Malaysia‐Japan International Institute of Technology, Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia;9. Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium;10. Department of Plant Systems Biology, VIB, Ghent, Belgium;11. Graduate School of Agriculture, Kyoto University, Kyoto, Japan;12. College of Bioresource Sciences, Nihon University, Fujisawa, Japan
Abstract:Bacteria‐derived enzymes that can modify specific lignin substructures are potential targets to engineer plants for better biomass processability. The Gram‐negative bacterium Sphingobium sp. SYK‐6 possesses a Cα‐dehydrogenase (LigD) enzyme that has been shown to oxidize the α‐hydroxy functionalities in β–O–4‐linked dimers into α‐keto analogues that are more chemically labile. Here, we show that recombinant LigD can oxidize an even wider range of β–O–4‐linked dimers and oligomers, including the genuine dilignols, guaiacylglycerol‐β‐coniferyl alcohol ether and syringylglycerol‐β‐sinapyl alcohol ether. We explored the possibility of using LigD for biosynthetically engineering lignin by expressing the codon‐optimized ligD gene in Arabidopsis thaliana. The ligD cDNA, with or without a signal peptide for apoplast targeting, has been successfully expressed, and LigD activity could be detected in the extracts of the transgenic plants. UPLC‐MS/MS‐based metabolite profiling indicated that levels of oxidized guaiacyl (G) β–O–4‐coupled dilignols and analogues were significantly elevated in the LigD transgenic plants regardless of the signal peptide attachment to LigD. In parallel, 2D NMR analysis revealed a 2.1‐ to 2.8‐fold increased level of G‐type α‐keto‐β–O–4 linkages in cellulolytic enzyme lignins isolated from the stem cell walls of the LigD transgenic plants, indicating that the transformation was capable of altering lignin structure in the desired manner.
Keywords:   Arabidopsis thaliana       ‐dehydrogenase  lignin biosynthesis     NMR     Sphingobium sp. SYK‐6
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