Optimal design for the dose-response screening of tight-binding enzyme inhibitors |
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Authors: | Kuzmič Petr |
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Institution: | BioKin Ltd., Watertown, MA 02472, USA |
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Abstract: | Optimal experimental designs for the dose–response screening of enzyme inhibitors were studied within the framework of the Box–Lucas theory. If the enzyme concentration E is considered as a fixed constant, an exact two-point D-optimal design consists of a pair of inhibitor concentrations equal to I1=0 and I2=E+K, where K is the apparent inhibition constant. If the enzyme concentration is treated as an adjustable parameter, an empirical three-point D-optimal design consists of three inhibitor concentrations equal to I1=0, I2=E+3K, and I3=0.7E. These results were applied to design optimized, irregularly spaced concentration series for routine inhibitor screening. A heuristic Monte Carlo simulation study confirmed that the optimized dilution series is significantly more efficient than the classic series characterized by a constant dilution ratio. An online calculator to create optimized dilution series is freely available at http://www.biokin.com/design/. |
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Keywords: | Enzyme kinetics Theory Mathematics Statistics Regression Enzyme inhibition Screening Optimal experimental design |
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