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Mutational landscape and genetic signatures of cell‐free DNA in tumour‐induced osteomalacia
Authors:Nan Wu  Zhen Zhang  Xi Zhou  Hengqiang Zhao  Yue Ming  Xue Wu  Xian Zhang  Xin‐Zhuang Yang  Meng Zhou  Hua Bao  Weisheng Chen  Yong Wu  Sen Liu  Huizi Wang  Yuchen Niu  Yalun Li  Yu Zheng  Yang Shao  Na Gao  Ying Yang  Ying Liu  Wenli Li  Jia Liu  Na Zhang  Xu Yang  Yuan Xu  Mei Li  Yingli Sun  Jianzhong Su  Jianguo Zhang  Weibo Xia  Guixing Qiu  Yong Liu  Jiaqi Liu  Zhihong Wu
Abstract:Tumour‐induced osteomalacia (TIO) is a very rare paraneoplastic syndrome with bone pain, fractures and muscle weakness, which is mostly caused by phosphaturic mesenchymal tumours (PMTs). Cell‐free DNA (cfDNA) has been regarded as a non‐invasive liquid biopsy for many malignant tumours. However, it has not been studied in benign tumours, which prompted us to adopt the targeted next‐generation sequencing approach to compare cfDNAs of 4 TIO patients, four patients with bone metastasis (BM) and 10 healthy controls. The mutational landscapes of cfDNA in TIO and BM groups were similar in the spectrum of allele frequencies and mutation types. Markedly, deleterious missense mutations in FGFR1 and loss‐of‐function mutations in MED12 were found in 3/4 TIO patients but none of BM patients. The gene ontology analysis strongly supported that these mutated genes found in TIOs would play a potential role in PMTs' process. The genetic signatures and corresponding change in expression of FGFR1 and FGF23 were further validated in PMT tissues from a test cohort of another three TIO patients. In summary, we reported the first study of the mutational landscape and genetic signatures of cfDNA in TIO/PMTs.
Keywords:cell‐free DNA  fibroblast growth factor receptor‐1  mediator complex subunit 12  next‐generation sequencing  tumour‐induced osteomalacia
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