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Applications of the double-barreled data in whole-genome shotgun sequence assembly and analysis |
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| Authors: | HAN Yujun NI Peixiang U Hong YE Jia HU Jianfei CHEN Chen HUANG Xiangang CONG Lijuan Li Guangyuan WANG Jing GU Xiaocheng YU Jun Li Songgang |
| Affiliation: | 1. College of Life Sciences, Peking University, Beijing,100871, China;Beijing Genomics Institute, Chinese Academy of Sciences, Beijing,101300, China 2. Beijing Genomics Institute, Chinese Academy of Sciences, Beijing,101300, China 3. James D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou,310012, China 4. College of Life Sciences, Peking University, Beijing 100871, China |
| Abstract: | Double-barreled (DB) data have been widely used for the assembly of large genomes. Based on the experience of building the whole-genome working draft of Oryza sativa L.ssp. Indica, we present here the prevailing and improved uses of DB data in the assembly procedure and report on novel applications during the following data-mining processes such as acquiring precise insert fragment information of each clone across the genome, and a new kind of Iow-cost whole-genome microarray. With the increasing number of organisms being sequenced,we believe that DB data will play an important role both in other assembly procedures and infuture genomic studies. |
| Keywords: | genome double-barreled data application whole-genome microarray |
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