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MaXLinker: Proteome-wide Cross-link Identifications with High Specificity and Sensitivity
Affiliation:3. Department of Computational Biology, Cornell University, Ithaca, New York,14853;4. Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, New York, 14853;5. Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853;6. Mass Spectrometry and Proteomics Facility, Institute of Biotechnology, Cornell University, Ithaca, New York,14853
Abstract:
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  • Highlights
    • •New quality assessment metrics to evaluate proteome-wide cross-linking mass spectrometry (XL-MS) data sets.
    • •New “MS3-centric” cross-link search engine named MaXLinker with high sensitivity and specificity.
    • •More than 9300 cross-links from our human proteome-wide XL-MS study.
    • •Orthogonal experimental validation of novel interactions identified in our study.
    Keywords:Protein cross-linking  systems biology  protein-protein interactions  computational biology  mass spectrometry
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