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MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures
Authors:Ting Huang  Meena Choi  Manuel Tzouros  Sabrina Golling  Nikhil Janak Pandya  Balazs Banfai  Tom Dunkley  Olga Vitek
Institution:1. Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA;2. Roche Pharma Research and Early Development, Pharmaceutical Sciences-BiOmics and Pathology, Roche Innovation Center Basel, Hoffmann-La Roche Ltd, Basel, Switzerland
Abstract:
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  • Highlights
    • •Statistical approach for differential abundance analysis for proteomic experiments with TMT labeling.
    • •Applicable to large-scale experiments with complex or unbalanced design.
    • •An open-source R/Bioconductor package compatible with popular data processing tools.
    Keywords:Mass spectrometry  statistics  quantification  bioinformatics software  mathematical modeling  hypothesis testing  multiple mixtures  protein quantification  TMT
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