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Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics
Institution:3. Departments of Chemistry and Molecular Biosciences, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208;4. Thermo Fisher Scientific, San Jose, California 95134;5. Proteinaceous Inc., Evanston, Illinois 60201
Abstract:
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  • Highlights
    • •Analysis of product ions produced by 213 nm UVPD is used to refine database search.
    • •A product ion at the N-terminus of Pro, y-2, is observed in 213 nm UVPD spectra.
    • •213 nm UVPD provides more complete proteoform characterization than HCD.
    • •HCD and 213 nm UVPD are complementary fragmentation methods for proteoforms <30 kDa.
    Keywords:Fourier transform MS  mass spectrometry  post-translational modifications  protein identification  tandem mass spectrometry  FDR  product ion  proteoform  top-down proteomics  UVPD
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