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Robust Summarization and Inference in Proteome-wide Label-free Quantification
Institution:1. Department of Applied Mathematics, Computer Science & Statistics, Ghent University, Belgium;2. VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium;3. Department of Biomolecular Medicine, Ghent University, Ghent, Belgium;4. Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium
Abstract:
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  • Highlights
    • •In depth performance assessment of leading tools for differential protein abundance.
    • •Novel fast modular framework MSqRobSum for robust protein summarization and inference.
    • •MsqRobSum outperforms leading protein summarization-based tools.
    • •MSqRobSum is on par with top-performing peptide based tool MSqRob.
    Keywords:Biostatistics  label-free quantification  bioinformatics  mass spectrometry  bioinformatics software  differential expression  ridge regression  shotgun proteomics  summarization
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