Polymorphism of Microsatellite Markers in Papaya (<Emphasis Type="Italic">Carica papaya</Emphasis> L.) |
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Authors: | Eder Jorge de Oliveira Vanusia Batista Oliveira Amorim Edneide Luciana Santiago Matos Juliana Leles Costa Milene da Silva Castellen Juliano Gomes Pádua Jorge Luiz Loyola Dantas |
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Institution: | 1.Embrapa Mandioca e Fruticultura Tropical (CNPMF),Cruz das Almas,Brazil;2.Universidade Federal do Rec?ncavo da Bahia (UFRB),Cruz das Almas,Brazil;3.Embrapa Sede,Brasília,Brazil;4.Embrapa Recursos Genéticos e Biotecnologia (CENARGEN),Brasília,Brazil |
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Abstract: | A set of 81 new microsatellite markers for Carica papaya L. previously identified by data mining using freely available sequence information from Genbank were tested for polymorphism
using 30 germplasm accessions from the Papaya Germplasm Bank (PGM) at Embrapa Mandioca e Fruticultura Tropical (CNPMF) and
18 landraces. The data were used to estimate pairwise genetic distances between the genotypes. A neighbor-joining based dendrogram
was used to define clusters and infer possible genetic structuring of the collection. Most microsatellites were polymorphic
(73%), with an observed number of alleles per locus ranging from one to eleven. The levels of observed and expected heterozygosity
for 51 polymorphic loci varied from 0.00 to 0.85 and from 0.08 to 0.82, averaging 0.19 and 0.59, respectively. Forty-four
percent of microsatellites showed polymorphism information content (PIC) higher than 0.50. The compound microsatellites seem
to be more informative than dinucleotide and trinucleotide repeats in average alleles per locus and PIC. Among dinucleotides,
AG/TC or GA/CT repeat motifs exhibited more informativeness than TA/AT, GT/CA and TG/AC repeat motifs. The neighbor-joining
analysis based on shared allele distance could differentiate all the papaya accessions and landraces as well as differences
in their genetic structure. This set of markers will be useful for examining parentage, inbreeding and population structure
in papaya. |
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