BBReader: A computer program for the combined use of the BioMagResBank and PDB databases |
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| Authors: | Reinhard Wimmer Norbert Müller Steffen B. Petersen |
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| Affiliation: | (1) MR Center, SINTEF-UNIMED, N-7034 Trondheim, Norway;(2) Institute of Chemistry, Johannes Kepler University, A-4040 Linz, Austria;(3) Department of Biotechnology, Norwegian University of Science and Technology, N-7034 Trondheim, Norway |
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| Abstract: | A computer program ( BBReader ) was developed which performs an inverse search in theBioMagResBank database. Given (cross) peak positions of a protein, the program searchesfor atoms with matching chemical shifts and suggests possible assignments for user-specifiedhomo- and heteronuclear one- to three-dimensional COSY- and NOESY-type experiments.It can handle 1H, 13C and 15N spectra. Distance information from PDB files can be utilizedfor filtering possible NOESY cross peak assignments. |
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| Keywords: | BioMagResBank PDB database Chemical shift assignment Protein Inverse search |
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