HCPM--program for hierarchical clustering of protein models |
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| Authors: | Gront Dominik Kolinski Andrzej |
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| Institution: | Faculty of Chemistry, Warsaw University Pasteura 1, 02-093 Warsaw, Poland. dgront@chem.uw.edu.pl |
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| Abstract: | HCPM is a tool for clustering protein structures from comparative modeling, ab initio structure prediction, etc. A hierarchical clustering algorithm is designed and tested, and a heuristic is provided for an optimal cluster selection. The method has been successfully tested during the CASP6 experiment. |
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