SNiPlay: a web-based tool for detection,management and analysis of SNPs. Application to grapevine diversity projects |
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| Authors: | Alexis Dereeper Stéphane Nicolas Loïc Le Cunff Roberto Bacilieri Agnès Doligez Jean-Pierre Peros Manuel Ruiz Patrice This |
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| Institution: | (1) Diversity, Genetics and Genomics of grapevine, UMR DIAPC 1097, INRA, Montpellier, France;(2) Integration of Data, UMR DAP 1096, CIRAD, Montpellier, France |
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| Abstract: | Background High-throughput re-sequencing, new genotyping technologies and the availability of reference genomes allow the extensive characterization
of Single Nucleotide Polymorphisms (SNPs) and insertion/deletion events (indels) in many plant species. The rapidly increasing
amount of re-sequencing and genotyping data generated by large-scale genetic diversity projects requires the development of
integrated bioinformatics tools able to efficiently manage, analyze, and combine these genetic data with genome structure
and external data. |
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