A discriminative method for protein remote homology detection and fold recognition combining Top-<Emphasis Type="Italic">n</Emphasis>-grams and latent semantic analysis |
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Authors: | Bin Liu Xiaolong Wang Lei Lin Qiwen Dong Xuan Wang |
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Institution: | (1) Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, PR China;(2) School of Computer Science and Technology, Harbin Institute of Technology, Harbin, PR China |
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Abstract: | Background Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods
based on support vector machine (SVM) are the most effective and accurate methods for solving these problems. A key step to
improve the performance of the SVM-based methods is to find a suitable representation of protein sequences. |
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