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A discriminative method for protein remote homology detection and fold recognition combining Top-<Emphasis Type="Italic">n</Emphasis>-grams and latent semantic analysis
Authors:Bin Liu  Xiaolong Wang  Lei Lin  Qiwen Dong  Xuan Wang
Institution:(1) Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, PR China;(2) School of Computer Science and Technology, Harbin Institute of Technology, Harbin, PR China
Abstract:

Background  

Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods based on support vector machine (SVM) are the most effective and accurate methods for solving these problems. A key step to improve the performance of the SVM-based methods is to find a suitable representation of protein sequences.
Keywords:
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