Sequence representation |
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| Authors: | F van Bockstaele |
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| Affiliation: | A.B.I., Institut Curie, Section de physique et chimie 11, rue Pierre Curie, 75231 Paris Cedex 05, France |
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| Abstract: | This article deals with the definition of a method for analyzing sequences of symbols, especially biological sequences. We are mostly interested in finding representations of sequences, that could help to explicit relationship between their structure and their activity. Starting with automatically built rules, governing occurrences of symbols within sequences, we define ways of using these rules to determine different subsequences that we assume to be contexts. Labelled contexts provide a possible representation of sequences. Finally an example of detected contexts in proteins is given. |
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| Keywords: | méthode inductive syntaxe locale contexte structure secondaire des protéines inductive method local syntax context protein secondary structure |
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