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A genome-wide association study identifies rs2000999 as a strong genetic determinant of circulating haptoglobin levels
Authors:Froguel Philippe  Ndiaye Ndeye Coumba  Bonnefond Amélie  Bouatia-Naji Nabila  Dechaume Aurélie  Siest Gérard  Herbeth Bernard  Falchi Mario  Bottolo Leonardo  Guéant-Rodriguez Rosa-Maria  Lecoeur Cécile  Langlois Michel R  Labrune Yann  Ruokonen Aimo  El Shamieh Said  Stathopoulou Maria G  Morandi Anita  Maffeis Claudio  Meyre David  Delanghe Joris R  Jacobson Peter  Sjöström Lars  Carlsson Lena M S  Walley Andrew  Elliott Paul  Jarvelin Marjo-Riita  Dedoussis George V  Visvikis-Siest Sophie
Affiliation:Centre National de la Recherche Scientifique (CNRS) 8199 - Institute of Biology, Pasteur Institute, Lille 2 University, Lille, France.
Abstract:Haptoglobin is an acute phase inflammatory marker. Its main function is to bind hemoglobin released from erythrocytes to aid its elimination, and thereby haptoglobin prevents the generation of reactive oxygen species in the blood. Haptoglobin levels have been repeatedly associated with a variety of inflammation-linked infectious and non-infectious diseases, including malaria, tuberculosis, human immunodeficiency virus, hepatitis C, diabetes, carotid atherosclerosis, and acute myocardial infarction. However, a comprehensive genetic assessment of the inter-individual variability of circulating haptoglobin levels has not been conducted so far.We used a genome-wide association study initially conducted in 631 French children followed by a replication in three additional European sample sets and we identified a common single nucleotide polymorphism (SNP), rs2000999 located in the Haptoglobin gene (HP) as a strong genetic predictor of circulating Haptoglobin levels (P(overall) = 8.1 × 10(-59)), explaining 45.4% of its genetic variability (11.8% of Hp global variance). The functional relevance of rs2000999 was further demonstrated by its specific association with HP mRNA levels (β = 0.23 ± 0.08, P = 0.007). Finally, SNP rs2000999 was associated with decreased total and low-density lipoprotein cholesterol in 8,789 European children (P(total cholesterol) = 0.002 and P(LDL) = 0.0008).Given the central position of haptoglobin in many inflammation-related metabolic pathways, the relevance of rs2000999 genotyping when evaluating haptoglobin concentration should be further investigated in order to improve its diagnostic/therapeutic and/or prevention impact.
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