Disentangling the Complexity of Mitogen-Activated Protein Kinases and Reactive Oxygen Species Signaling

We report here on the identification of the major plasma membrane (PM) ascorbate-reducible b-type cytochrome of bean (Phaseolus vulgaris) and soybean (Glycine max) hypocotyls as orthologs of Arabidopsis (Arabidopsis thaliana) AIR12 (for auxin induced in root cultures). Soybean AIR12, which is glycosylated and glycosylphosphatidylinositol-anchored to the external side of the PM in vivo, was expressed in Pichia pastoris in a recombinant form, lacking the glycosylphosphatidylinositol modification signal and purified from the culture medium. Recombinant AIR12 is a soluble protein predicted to fold into a β-sandwich domain and belonging to the DOMON (for dopamine β-monooxygenase N terminus) domain superfamily. It is shown to be a b-type cytochrome with a symmetrical α-band at 561 nm, fully reduced by ascorbate, and fully oxidized by monodehydroascorbate radical. AIR12 is a high-potential cytochrome b showing a wide bimodal dependence from the redox potential between +80 mV and +300 mV. Optical absorption and electron paramagnetic resonance analysis indicate that AIR12 binds a single, highly axial low-spin heme, likely coordinated by methionine-91 and histidine-76, which are strongly conserved in AIR12 sequences. Phylogenetic analyses reveal that the auxin-responsive genes AIR12 represent a new family of PM b-type cytochromes specific to flowering plants. Circumstantial evidence suggests that AIR12 may interact with other redox partners within the PM to constitute a redox link between cytoplasm and apoplast.Complex interactions between plant cells and the environment are mediated by the apoplast. The apoplastic liquid phase permeating the cell wall contains relatively low concentrations of solutes (Dietz, 1997). Its composition, although largely determined by the protoplast, is easily perturbed by environmental challenges that can thus be perceived by the apoplast and translated into signals that trigger cell responses (Pignocchi and Foyer, 2003; Foyer and Noctor, 2005). Environmental challenges affecting the apoplast commonly result in an oxidative load, caused, for instance, by pollutants (e.g. ozone; Sandermann, 2008) or by endogenously generated reactive oxygen species (ROS). Several enzymatic and nonenzymatic systems are able to generate ROS in the apoplast (Fry, 1998; Apel and Hirt, 2004), an event that is not restricted to biotic or abiotic stresses (Torres and Dangl, 2005), but also involved in diverse physiological conditions, including stomata closure and cell growth (Foreman et al., 2003; Mori and Schroeder, 2004; Gapper and Dolan, 2006; Schopfer and Liszkay, 2006).Apoplastic reductants not only act as an antioxidant barrier, but they could also modulate oxidative signals, thus actively contributing to plant adaptation to the environment. Ascorbate occurs at 10⁻⁴ to 10⁻³ m concentrations in the apoplast, where it represents the major pool of low-molecular-mass antioxidants (Dietz, 1997; Pignocchi and Foyer, 2003; Padu et al., 2005). Maintenance of the apoplastic ascorbate pool depends on transport systems of the plasma membrane (PM; Horemans et al., 2000). The redox state of the ascorbate in the apoplast is relatively flexible and typically more oxidized than in the symplast (Cordoba-Pedregosa et al., 2003, 2005; de Pinto and De Gara, 2004; Padu et al., 2005; Pignocchi et al., 2006). Ascorbate oxidation can be effected enzymatically by ascorbate oxidase or ascorbate peroxidase, and nonenzymatically by direct interaction with ROS (including ozone; Sandermann, 2008), transition metals (e.g. iron, copper; Fry, 1998), or phenolic radicals (Takahama, 1993). Oxidation of ascorbate gives rise to the monodehydroascorbate (MDA) radical, which can disproportionate into ascorbate and fully oxidized dehydroascorbate. In addition, the apoplastic MDA radical can be reduced back to ascorbate by a trans-PM redox system that uses cytosolic ascorbate as a reductant and involves a high-potential cytochrome b (Horemans et al., 1994). The latter has escaped molecular identification thus far (Trost et al., 2000; Bérczi et al., 2003; Griesen et al., 2004; Preger et al., 2005).It was suggested (Asard et al., 2001) that the trans-PM electron transfer from cytosolic ascorbate to apoplastic MDA may be effected by a cytochrome b561, in analogy to the electron transfer of animal chromaffin vesicles (Kelley and Njus, 1986). Cytochromes b561 are high-potential, transmembrane redox proteins of about 25 kD made of six membrane-spanning α-helices, which bind two hemes b. One heme is predicted to be close to an ascorbate binding site facing the cytosol, whereas the second heme faces the opposite side of the membrane and can be oxidized by either MDA or ferrichelates (Tsubaki et al., 1997; McKie et al., 2001; Bérczi et al., 2005; Kamensky et al., 2007). Plants contain several orthologous genes to animal cytochrome b561 (Asard et al., 2000; Bashtovyy et al., 2003). Arabidopsis (Arabidopsis thaliana) contains four genes belonging to this family (Tsubaki et al., 2005) and one of these (At4g25570, CYBASC1), expressed in recombinant form, showed similar biochemical properties to animal cytochrome b561 (Bérczi et al., 2007). However, the localization in vivo of plant cytochrome b561 is controversial. Arabidopsis CYBASC1 was found to be associated with the tonoplast membrane (Griesen et al., 2004) and annotated in proteomic studies as either a tonoplast protein (Carter et al., 2004; Shimaoka et al., 2004) or a chloroplast protein (Zybailov et al., 2008). Tonoplast localization was also reported for bean (Phaseolus vulgaris) CYBASC1 in etiolated hypocotyls (Preger et al., 2005), whereas a GFP construct of CYBASC1 from wild watermelon (Citrullus lanatus) was shown to be targeted to the PM in transformed onion (Allium cepa) epidermal cells (Nanasato et al., 2005). No data are available for any other isoform of cytochrome b561 in plants.An ascorbate-reducible cytochrome b from enriched PM preparations was purified as a glycosylated protein of 55 to 63 kD (bean hypocotyls; Trost et al., 2000) or 120 kD (Arabidopsis; Bérczi et al., 2003) in SDS-PAGE. The association to the PM of the bean hypocotyl cytochrome was confirmed by analytical Suc gradient centrifugation (Preger et al., 2005). Based on potentiometric redox titrations, both bean and Arabidopsis cytochrome b preparations were suggested to bind two hemes with distant redox potentials (E_m7 +135 and +180/+200 mV). However, the nature of this high-potential cytochrome b of plant PM remained elusive, although clearly different from tonoplast cytochrome b561 (Preger et al., 2005).In this article, we report on the purification, molecular identification, cloning, and biochemical characterization of the major ascorbate-reducible cytochrome b associated with the PM of soybean (Glycine max) etiolated hypocotyls. The coding gene, known as AIR12 (for auxin induced in root cultures), is early expressed during auxin-induced lateral root formation in Arabidopsis (Laskowski et al., 2006). We demonstrate that AIR12 is a member of a new family of ascorbate-reducible cytochromes b specific to flowering plant species. The protein is glycosylated and hydrophilic and predicted to be associated in vivo with the external face of the PM by means of a glycosylphosphatidylinositol (GPI) anchor (Borner et al., 2003). AIR12 has been found to be associated with lipid rafts together with other redox proteins (Lefebvre et al., 2007), which may act as its partners in a possible electron link between apoplast and symplast.