Thylakoid Lumen Carbonic Anhydrase (CAH3) Mutation Suppresses Air-Dier Phenotype of LCIB Mutant in Chlamydomonas reinhardtii

An active CO₂-concentrating mechanism is induced when Chlamydomonas reinhardtii acclimates to limiting inorganic carbon (Ci), either low-CO₂ (L-CO₂; air level; approximately 0.04% CO₂) or very low-CO₂ (VL-CO₂; approximately 0.01% CO₂) conditions. A mutant, ad1, which is defective in the limiting-CO₂-inducible, plastid-localized LCIB, can grow in high-CO₂ or VL-CO₂ conditions but dies in L-CO₂, indicating a deficiency in a L-CO₂-specific Ci uptake and accumulation system. In this study, we identified two ad1 suppressors that can grow in L-CO₂ but die in VL-CO₂. Molecular analyses revealed that both suppressors have mutations in the CAH3 gene, which encodes a thylakoid lumen localized carbonic anhydrase. Photosynthetic rates of L-CO₂-acclimated suppressors under acclimation CO₂ concentrations were more than 2-fold higher than ad1, apparently resulting from a more than 20-fold increase in the intracellular concentration of Ci as measured by direct Ci uptake. However, photosynthetic rates of VL-CO₂-acclimated cells under acclimation CO₂ concentrations were too low to support growth in spite of a significantly elevated intracellular Ci concentration. We conclude that LCIB functions downstream of CAH3 in the CO₂-concentrating mechanism and probably plays a role in trapping CO₂ released by CAH3 dehydration of accumulated Ci. Apparently dehydration by the chloroplast stromal carbonic anhydrase CAH6 of the very high internal Ci caused by the defect in CAH3 provides Rubisco sufficient CO₂ to support growth in L-CO₂-acclimated cells, but not in VL-CO₂-acclimated cells, even in the absence of LCIB.CO₂ serves both as the substrate for photosynthesis and as an important signal to regulate plant growth and development, so variable CO₂ concentrations can impact photosynthesis, growth, and productivity of plants. Terrestrial C₄ plants have developed a CO₂-concentrating mechanism (CCM) involving anatomical and biochemical adaptations to accumulate a higher concentration of CO₂ as substrate Rubisco and to suppress oxygenation of ribulose-1,5-bisP, a wasteful side reaction. In contrast, a different type of CCM is induced in the unicellular green microalga Chlamydomonas reinhardtii when the supply of dissolved inorganic carbon (Ci; CO₂ and HCO₃⁻) for photosynthesis is limited (Beardall and Giordano, 2002; Giordano et al., 2005; Moroney and Ynalvez, 2007; Spalding, 2008). In response to limiting CO₂, the CCM uses active Ci transport, both at the plasma membrane and the chloroplast envelope, to accumulate a high concentration of HCO₃⁻ within the chloroplast (Palmqvist et al., 1988; Sültemeyer et al., 1988). The thylakoid lumen carbonic anhydrase (CAH3) plays an essential role in the rapid dehydration of the accumulated HCO₃⁻ to release CO₂ into the pyrenoid, a Rubisco-containing internal compartment of the chloroplast, for assimilation by Rubisco (Price et al., 2002; Spalding et al., 2002).While a number of genes and proteins essential to the operation of the CCM in C. reinhardtii have been identified, our understanding of Ci uptake and its regulation, as well as other aspects of CCM function is limited. A better understanding of the similar CCM in prokaryotic organisms, specifically the cyanobacteria Synechocystis and Synechococcus, has been gained. At least five different types of Ci transporters have been identified in cyanobacteria, including three HCO₃⁻ transporters and two active CO₂ uptake systems (Price et al., 2002, 2004).Recently, at least three distinct CO₂-regulated acclimation states were identified in C. reinhardtii based on growth, photosynthesis and gene expression characteristics, a high-CO₂ (H-CO₂) state (5%–0.5% CO₂), low-CO₂ (L-CO₂) state (air level; 0.4%–0.03% CO₂), and very low-CO₂ (VL-CO₂) state (0.01%–0.005% CO₂; Vance and Spalding, 2005). Two allelic HCR (H-CO₂-requiring) mutants, pmp1 and ad1, grow as well (pmp1) or nearly as well (ad1) as wild-type cells in both H-CO₂ and VL-CO₂ conditions while only dying in L-CO₂, indicating a deficient Ci transport and/or accumulation system only in the L-CO₂ acclimation state (Spalding et al., 1983b, 2002). The defective gene responsible for the pmp1/ad1 phenotype was identified as LCIB, a limiting CO₂-inducible gene, the product of which is predicted to be located in the chloroplast stroma and proposed to be involved with chloroplast Ci uptake in L-CO₂ conditions (Wang and Spalding, 2006). The LCIB gene product is a member of a small gene family so far only found in a few microalgae species (Spalding, 2008).To investigate the roles of LCIB in eukaryotic photosynthetic organisms and identify other functional components involved in chloroplast Ci accumulation in C. reinhardtii, we used an insertional mutagenesis approach to select suppressors of the air-dier phenotype of the LCIB mutant ad1. In this study, we describe two ad1 suppressors, ad-su6 and ad-su7, that grow normally in L-CO₂ but, unlike ad1, die in VL-CO₂. This report also presents data suggesting that the air-dier phenotype of ad1 is suppressed by increased intracellular Ci concentrations in the two suppressors, and suggesting a possible role for LCIB as a CO₂ trap rather than having any direct role in chloroplast envelope Ci transport.