SHRiMP2: sensitive yet practical SHort Read Mapping |
| |
Authors: | David Matei Dzamba Misko Lister Dan Ilie Lucian Brudno Michael |
| |
Institution: | Department of Computer Science, Princeton University, USA. |
| |
Abstract: | We report on a major update (version 2) of the original SHort Read Mapping Program (SHRiMP). SHRiMP2 primarily targets mapping sensitivity, and is able to achieve high accuracy at a very reasonable speed. SHRiMP2 supports both letter space and color space (AB/SOLiD) reads, enables for direct alignment of paired reads and uses parallel computation to fully utilize multi-core architectures. AVAILABILITY: SHRiMP2 executables and source code are freely available at: http://compbio.cs.toronto.edu/shrimp/. |
| |
Keywords: | |
本文献已被 PubMed 等数据库收录! |
|