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New horizons of adenosinetriphosphate energetics arising from interaction with magnesium cofactor
Authors:Alexander A Tulub  V E Stefanov
Institution:(1) Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA;(2) Department of Biophysics and Biochemistry, Computational Modeling Group, Saint-Petersburg State University, Universitetskaya Embankment 7/9, Saint-Petersburg, 199034, Russian Federation
Abstract:MD DFT:B3LYP (6-31G** basis set, T = 310 K) method is used to study interactions singlet (S) and triplet (T) reaction paths] between adenosinetriphosphate, ATP4−, and Mg(H2O)6]2+ in water environment, modeled with 78 water molecules. Computations reveal the appearance of low and high-energy states (stable, quasi-stable, and unstable), assigned to different spin symmetries. At the initial stage of interaction, ATP donates a part of its negative charge to the Mg complex making the Mg slightly charged. As a result, the original octahedral Mg complex loses two (S state) or four (T state) water molecules. Moving along S or T potential energy surfaces (PESs), Mg(H2O)4 or Mg(H2O)2 display different ways of complexation with ATP. S path favors the formation of a stable chelate with the O1–O2 fragment of ATP triphosphate tail, whereas T path favors producing a single-bonded complex with the O2. The latter, being unstable, undergoes a further conversion into a spin-separated complex, also unstable, and two metastable S complexes, which finally arise in two stable, low-energy and high-energy, chelates. The spin-separated complex experiences rapid decomposition resulting in the production of a highly reactive adenosinemonophosphate ion-radical •AMP, early observed in the CIDNP experiment (Tulub 2006). Biological consequences of the findings are discussed.
Keywords:MD DFT  ATP  Mg complexes
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