Introducing meta-services for biomedical information extraction |
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| Authors: | Florian Leitner,Martin Krallinger,Carlos Rodriguez-Penagos,Jörg Hakenberg,Conrad Plake,Cheng-Ju Kuo,Chun-Nan Hsu,Richard Tzong-Han Tsai,Hsi-Chuan Hung,William W Lau,Calvin A Johnson,Rune Sætre,Kazuhiro Yoshida,Yan Hua Chen,Sun Kim,Soo-Yong Shin,Byoung-Tak Zhang,William A Baumgartner Suffix" >Jr,Lawrence Hunter,Barry Haddow,Michael Matthews,Xinglong Wang,Patrick Ruch,Frédéric Ehrler,Arzucan Özgür,Güneş Erkan,Dragomir R Radev,Michael Krauthammer,ThaiBinh Luong,Robert Hoffmann,Chris Sander,Alfonso Valencia |
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| Affiliation: | Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain. fleitner@cnio.es |
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| Abstract: | We introduce the first meta-service for information extraction in molecular biology, the BioCreative MetaServer (BCMS; http://bcms.bioinfo.cnio.es/). This prototype platform is a joint effort of 13 research groups and provides automatically generated annotations for PubMed/Medline abstracts. Annotation types cover gene names, gene IDs, species, and protein-protein interactions. The annotations are distributed by the meta-server in both human and machine readable formats (HTML/XML). This service is intended to be used by biomedical researchers and database annotators, and in biomedical language processing. The platform allows direct comparison, unified access, and result aggregation of the annotations. |
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