Catabolite regulation analysis of <em>Escherichia coli</em> for acetate overflow mechanism and co-consumption of multiple sugars based on systems biology approach using computer simulation期刊界 All Journals 搜尽天下杂志传播学术成果专业期刊搜索期刊信息化学术搜索

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*Catabolite regulation analysis of Escherichia coli* for acetate overflow mechanism and co-consumption of multiple sugars based on systems biology approach using computer simulation**

Authors:	Yu Matsuoka Kazuyuki Shimizu

Institution:	1. Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, Iizuka, Fukuoka 820-8502, Japan;2. Institute of Advanced Bioscience, Keio University, Tsuruoka, Yamagata 997-0017, Japan

Abstract:

Keywords:	CCR carbon catabolite repression PP pathway pentose phosphate pathway TCA cycle tricarboxylic acid cycle PTS phosphotransferase system EI enzyme I EII enzyme II HPr histidine-phosphorylatable protein Cya adenylate cyclase CIT citrate E4P erythrose-4-phosphate FDP fructose-1 6-bisphosphate F6P fructose-6-phosphate GF6P glucose-6-phosphate and fructose-6-phosphate G6P glucose-6-phosphate GAP glycelaldehyde-3-phosphate GLC glucose GOX glyoxylate ICI isocitrate αKG α-ketoglutarate MAL malate OAA oxaloacetate PEP phosphoenol pyruvate 6PG 6-phosphogluconate PYR pyruvate R5P ribose-5-phosphate RU5P ribulose-5-phosphate S7P sedoheptulose-7-phosphate SUC succinate TP triose phosphate X5P xylulose-5-phosphate XYL xylose XYLU xylulose Ack acetate kinase Acs acetyl coenzyme A synthetase CS citrate synthase Eno enolase Fbp fructose bisphosphatase G6PDH glucose-6-phosphate dehydrogenase Glk glucokinase ICDH isocitrate dehydrogenase Icl isocitrate lyase MDH malate dehydrogenase Mez malic enzyme MS malate synthase Pck phosphoenolpyruvate carboxykinase PDH pyruvate dehydrogenase Pfk phosphofructokinase PGDH 6-phosphogluconate dehydrogenase Ppc phosphoenolpyruvate carboxylase Pps phosphoenolpyruvate synthase Pta phosphotransacetylase Pyk pyruvate kinase Rpe ribulose phosphate epimerase Rpi ribose phosphate isomerase Tal transaldolase TktA transketolase I TktB transketolase II XT xylose transport Xyi xylose isomerase Xyk xylulokinase
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