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Investigations on small molecule inhibitors targeting the histone H3K4 tri-methyllysine binding PHD-finger of JmjC histone demethylases
Authors:Bhaskar Bhushan  Alexandre Erdmann  Yijia Zhang  Roman Belle  Catrine Johannson  Udo Oppermann  Richard J Hopkinson  Christopher J Schofield  Akane Kawamura
Institution:1. Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom;2. Radcliffe Department of Medicine, Division of Cardiovascular Medicine, University of Oxford, The Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford OX3 7BN, United Kingdom;3. Botnar Research Centre, NIHR Oxford Biomedical Research Unit, University of Oxford, Oxford, United Kingdom
Abstract:Plant homeodomain (PHD) containing proteins are important epigenetic regulators and are of interest as potential drug targets. Inspired by the amiodarone derivatives reported to inhibit the PHD finger 3 of KDM5A (KDM5A(PHD3)), a set of compounds were synthesised. Amiodarone and its derivatives were observed to weakly disrupt the interactions of a histone H3K4me3 peptide with KDM5A(PHD3). Selected amiodarone derivatives inhibited catalysis of KDM5A, but in a PHD-finger independent manner. Amiodarone derivatives also bind to H3K4me3-binding PHD-fingers from the KDM7 subfamily. Further work is required to develop potent and selective PHD finger inhibitors.
Keywords:Epigenetics  PHD-finger inhibitor  Plant Homeodomain  JmjC-KDMs  Histone demethylases
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