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Systematic Phenotyping of a Large-Scale Candida glabrata Deletion Collection Reveals Novel Antifungal Tolerance Genes
Authors:Tobias Schwarzmüller  Biao Ma  Ekkehard Hiller  Fabian Istel  Michael Tscherner  Sascha Brunke  Lauren Ames  Arnaud Firon  Brian Green  Vitor Cabral  Marina Marcet-Houben  Ilse D Jacobsen  Jessica Quintin  Katja Seider  Ingrid Frohner  Walter Glaser  Helmut Jungwirth  Sophie Bachellier-Bassi  Murielle Chauvel  Ute Zeidler  Dominique Ferrandon  Toni Gabaldón  Bernhard Hube  Christophe d'Enfert  Steffen Rupp  Brendan Cormack  Ken Haynes  Karl Kuchler
Abstract:The opportunistic fungal pathogen Candida glabrata is a frequent cause of candidiasis, causing infections ranging from superficial to life-threatening disseminated disease. The inherent tolerance of C. glabrata to azole drugs makes this pathogen a serious clinical threat. To identify novel genes implicated in antifungal drug tolerance, we have constructed a large-scale C. glabrata deletion library consisting of 619 unique, individually bar-coded mutant strains, each lacking one specific gene, all together representing almost 12% of the genome. Functional analysis of this library in a series of phenotypic and fitness assays identified numerous genes required for growth of C. glabrata under normal or specific stress conditions, as well as a number of novel genes involved in tolerance to clinically important antifungal drugs such as azoles and echinocandins. We identified 38 deletion strains displaying strongly increased susceptibility to caspofungin, 28 of which encoding proteins that have not previously been linked to echinocandin tolerance. Our results demonstrate the potential of the C. glabrata mutant collection as a valuable resource in functional genomics studies of this important fungal pathogen of humans, and to facilitate the identification of putative novel antifungal drug target and virulence genes.
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