Studies on the bacteriophage MS2. 23. Fixation of the MS2 RNA acid structure by formaldehyde

When MS2 RNA is heated at low p^H in the presence of formaldehyde, a fast-sedimenting conformation is irreversibly formed. This species is homogeneous and stable at neutral p^H. Its formation further requires Mg⁺⁺ ions and low ionic strength. The most compact form sediments at 46S and is obtained after short reaction times at high temperature or after long reaction times at 35°C. Melting curves suggest that the specific acid conformation is not destabilized by the formaldehyde addition reaction. The p^H at which this acid conformation is formed depends on the MgC1₂ concentration. At 10^?2M MgCl₂ the midpoint is p^H 5.3. Removal of more than half of the bound formaldehyde has no effect on the compactness of the molecule, although most of the original secondary structure has not yet re-formed.