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MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics

Institution:	1. Khoury College of Computer Sciences, Northeastern University, Boston, Massachusetts, USA;2. Department of Mathematical Sciences, Kent State University, Kent, Ohio, USA;3. ULUA BV, Antwerp, Belgium;4. MPL, Genentech, South San Francisco, California, USA

Abstract:

Keywords:	mass spectrometry statistics posttranslational modifications quantification bioinformatics software ANOVA"} {"#name":"keyword" "$":{"id":"kwrd0020"} "$$":[{"#name":"text" "_":"Analysis of variance DDA"} {"#name":"keyword" "$":{"id":"kwrd0030"} "$$":[{"#name":"text" "_":"Data-dependent acquisitions DIA"} {"#name":"keyword" "$":{"id":"kwrd0040"} "$$":[{"#name":"text" "_":"Data-independent acquisition FDR"} {"#name":"keyword" "$":{"id":"kwrd0050"} "$$":[{"#name":"text" "_":"false discovery rate GSDMD"} {"#name":"keyword" "$":{"id":"kwrd0060"} "$$":[{"#name":"text" "_":"Gasdermin D KGG"} {"#name":"keyword" "$":{"id":"kwrd0070"} "$$":[{"#name":"text" "_":"Ub-remnant diglycyl-lysine MS"} {"#name":"keyword" "$":{"id":"kwrd0080"} "$$":[{"#name":"text" "_":"mass spectrometry PTM"} {"#name":"keyword" "$":{"id":"kwrd0090"} "$$":[{"#name":"text" "_":"Posttranslational modifications PPV"} {"#name":"keyword" "$":{"id":"kwrd0100"} "$$":[{"#name":"text" "_":"positive predictive value SRM"} {"#name":"keyword" "$":{"id":"kwrd0110"} "$$":[{"#name":"text" "_":"Selected reaction monitoring TMT"} {"#name":"keyword" "$":{"id":"kwrd0120"} "$$":[{"#name":"text" "_":"Tandem mass tag
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