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Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus
Authors:Estoup Arnaud  Baird Stuart J E  Ray Nicolas  Currat Mathias  Cornuet Jean-Marie  Santos Filipe  Beaumont Mark A  Excoffier Laurent
Affiliation:1. INRA, UMR CBGP (INRA/IRD/Cirad/Montpellier SupAgro), Campus International de Baillarguet, CS 30016, F-34988 Montferrier-sur-Lez Cedex, France;2. INRA, UMR CBGP (INRA/IRD/Cirad/Montpellier SupAgro), Campus International de Baillarguet, CS 30016, F-34988 Montferrier-sur-Lez Cedex, France

Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO/UP), Campus Agrário de Vairão, 4485-661 Vairão, Portugal;3. Computational and Molecular Population Genetics Lab (CMPG), Zoological Institute, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland

EnviroSPACE Laboratory, Climate Change and Climate Impacts, Institute for Environmental Sciences, University of Geneva, Battelle - Building D, 7 route de Drize, 1227 Carouge, Switzerland;4. Computational and Molecular Population Genetics Lab (CMPG), Zoological Institute, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland

Laboratory of Anthropology, Genetics and Peopling History (AGP), Department of Anthropology and Ecology, University of Geneva, 12 rue Gustave-Revilliod, CH-1227 Geneva, Switzerland;5. School of Animal and Microbial Sciences, University of Reading, Whiteknights, Reading RG6 6AJ, UK;6. Computational and Molecular Population Genetics Lab (CMPG), Zoological Institute, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland

Abstract:We developed a spatially explicit model of a bioinvasion and used an approximate Bayesian computation (ABC) framework to make various inferences from a combination of genetic (microsatellite genotypes), historical (first observation dates) and geographical (spatial coordinates of introduction and sampled sites) information. Our method aims to discriminate between alternative introduction scenarios and to estimate posterior densities of demographically relevant parameters of the invasive process. The performance of our landscape-ABC method is assessed using simulated data sets differing in their information content (genetic and/or historical data). We apply our methodology to the recent introduction and spatial expansion of the cane toad, Bufo marinus, in northern Australia. We find that, at least in the context of cane toad invasion, historical data are more informative than genetic data for discriminating between introduction scenarios. However, the combination of historical and genetic data provides the most accurate estimates of demographic parameters. For the cane toad, we find some evidence for a strong bottleneck prior to introduction, a small initial number of founder individuals (about 15), a large population growth rate (about 400% per generation), a standard deviation of dispersal distance of 19 km per generation and a high invasion speed at equilibrium (50 km per year). Our approach strengthens the application of the ABC method to the field of bioinvasion by allowing statistical inferences to be made on the introduction and the spatial expansion dynamics of invasive species using a combination of various relevant sources of information.
Keywords:Bayesian inference  bioinvasion  demographic inferences  genetic data  historical data  spatial expansion
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