Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila |
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| Authors: | Teruaki Taji Kenji Komatsu Taku Katori Yoshikazu Kawasaki Yoichi Sakata Shigeo Tanaka Masatomo Kobayashi Atsushi Toyoda Motoaki Seki Kazuo Shinozaki |
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| Affiliation: | 1.Faculty of Applied Bioscience,Tokyo University of Agriculture,Setagaya-ku,Japan;2.Kihara Institute for Biological Research,Yokohama City University,Totsuka,Japan;3.Experimental Plant Division, BioResource Center,RIKEN Tsukuba Institute,Tsukuba,Japan;4.RIKEN Genomic Sciences Center,Tsurumi-ku,Japan;5.Comparative Genomics Laboratory,National Institute of Genetics,Mishima,JAPAN;6.RIKEN Plant Science Center,Yokohama,Japan |
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| Abstract: | Background Thellungiella halophila (also known as T. salsuginea) is a model halophyte with a small size, short life cycle, and small genome. Thellungiella genes exhibit a high degree of sequence identity with Arabidopsis genes (90% at the cDNA level). We previously generated a full-length enriched cDNA library of T. halophila from various tissues and from whole plants treated with salinity, chilling, freezing stress, or ABA. We determined the DNA sequences of 20 000 cDNAs at both the 5'- and 3' ends, and identified 9569 distinct genes. |
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