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Identification and characterization of the mitochondrial membrane sorting signals in phosphatidylserine decarboxylase 1 from Saccharomyces cerevisiae
Authors:Ariane Wagner  Francesca Di Bartolomeo  Isabella Klein  Claudia Hrastnik  Kim Nguyen Doan  Thomas Becker  Günther Daum
Institution:1. Institute of Biochemistry, Graz University of Technology, Petersgasse 12/2, 8010 Graz, Austria;2. Institute of Biochemistry and Molecular Biology ZBMZ, Faculty of Medicine, University of Freiburg, Germany;3. Faculty of Biology, University of Freiburg, Germany;4. BIOSS Center for Biological Signalling Studies, University of Freiburg, Germany
Abstract:Phosphatidylserine decarboxylase 1 (Psd1p) catalyzes the formation of the majority of phosphatidylethanolamine (PE) in the yeast Saccharomyces cerevisiae. Psd1p is localized to mitochondria, anchored to the inner mitochondrial membrane (IMM) through membrane spanning domains and oriented towards the mitochondrial intermembrane space. We found that Psd1p harbors at least two inner membrane-associated domains, which we named IM1 and IM2. IM1 is important for proper orientation of Psd1p within the IMM (Horvath et al., J. Biol. Chem. 287 (2012) 36744–55), whereas it remained unclear whether IM2 is important for membrane-association of Psd1p. To discover the role of IM2 in Psd1p import, processing and assembly into the mitochondria, we constructed Psd1p variants with deletions in IM2. Removal of the complete IM2 led to an altered topology of the protein with the soluble domain exposed to the matrix and to decreased enzyme activity. Psd1p variants lacking portions of the N-terminal moiety of IM2 were inserted into IMM with an altered topology. Psd1p variants with deletions of C-terminal portions of IM2 accumulated at the outer mitochondrial membrane and lost their enzyme activity. In conclusion we showed that IM2 is essential for full enzymatic activity, maturation and correct integration of yeast Psd1p into the inner mitochondrial membrane.
Keywords:CDP  cytidine diphosphate  CL  cardiolipin  DMPE  dimethylphosphatidylethanolamine  EDTA  ethylenediaminetetraacetic acid  ER  endoplasmic reticulum  Etn  ethanolamine  LP  lysophospholipids  IM1 and IM2  inner mitochondrial sorting signal 1 and 2  IMM  inner mitochondrial membrane  MMGal –ura  minimal galactose media without uracil  MMGlu –ura  minimal glucose media without uracil  MPP  mitochondrial processing peptidase  MT  mitochondrial targeting sequence  OMM  outer mitochondrial membrane  MPP  mitochondrial processing peptidase  Oct1p  octapeptidyl aminopeptidase  PA  phosphatidic acid  PC  phosphatidylcholine  PE  phosphatidylethanolamine  PI  phosphatidylinositol  PMSF  phenylmethylsulfonyl fluoride  PS  phosphatidylserine  Psd1  phosphatidylserine decarboxylase 1  Psd2  phosphatidylserine decarboxylase 2  Psd1β  phosphatidylserine decarboxylase 1 β-subunit  SRS  predicted substrate recognition site  TCA  trichloroacetic acid  TIM  translocase of the inner mitochondrial membrane  TLC  thin layer chromatography  TOM  translocase of the outer mitochondrial membrane  YPD  complex glucose media  Phosphatidylethanolamine  Phosphatidylserine  Phosphatidylserine decarboxylase  Membrane anchor
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