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Solution and crystal structure of BA42, a protein from the Antarctic bacterium Bizionia argentinensis comprised of a stand‐alone TPM domain
Authors:Martin Aran  Clara Smal  Leonardo Pellizza  Mariana Gallo  Lisandro H Otero  Sebastián Klinke  Fernando A Goldbaum  Esteban R Ithurralde  Andrés Bercovich  Walter P Mac Cormack  Adrián G Turjanski  Daniel O Cicero
Institution:1. Fundación Instituto Leloir, IIBBA‐CONICET, Patricias Argentinas 435 (C1405BWE), , Buenos Aires, Argentina;2. Plataforma Argentina de Biología Estructural y Metabolómica PLABEM, Patricias Argentinas 435 (C1405BWE), , Buenos Aires, Argentina;3. Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, e INQUIMAE‐CONICET, Intendente Güiraldes 2160 (C1428EGA), , Buenos Aires, Argentina;4. Biosidus S.A., Constitución 4234 (C1254ABX), , Buenos Aires, Argentina;5. Instituto Antártico Argentino, Cerrito 1248 (C1010AAZ), , Buenos Aires, Argentina;6. Dipartimento di Scienze e Tecnologie Chimiche, Università di Roma “Tor Vergata”, via della Ricerca Scientifica SNC (00133), , Rome, Italy
Abstract:The structure of the BA42 protein belonging to the Antarctic flavobacterium Bizionia argentinensis was determined by nuclear magnetic resonance and X‐ray crystallography. This is the first structure of a member of the PF04536 family comprised of a stand‐alone TPM domain. The structure reveals a new topological variant of the four β‐strands constituting the central β‐sheet of the αβα architecture and a double metal binding site stabilizing a pair of crossing loops, not observed in previous structures of proteins belonging to this family. BA42 shows differences in structure and dynamics in the presence or absence of bound metals. The affinity for divalent metal ions is close to that observed in proteins that modulate their activity as a function of metal concentration, anticipating a possible role for BA42. Proteins 2014; 82:3062–3078. © 2014 Wiley Periodicals, Inc.
Keywords:structural genomics  Antarctic bacteria  Bizionia argentinensis  BA42  protein structure  nuclear magnetic resonance  X‐ray crystallography
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