Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens |
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| Authors: | Rileen Sinha Andreas D Zimmer Kathrin Bolte Daniel Lang Ralf Reski Matthias Platzer Stefan A Rensing Rolf Backofen |
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| Affiliation: | 1.Bioinformatics group,University of Freiburg,Germany;2.Faculty of Biology,University of Freiburg,Freiburg,Germany;3.Plant Biotechnology, Faculty of Biology,University of Freiburg,Freiburg,Germany;4.Freiburg Initiative for Systems Biology (FRISYS),University of Freiburg,Freiburg,Germany;5.Centre for Biological Signalling Studies (bioss),University of Freiburg,Freiburg,Germany;6.Genome Analysis, Leibniz Institute for Age Research - Fritz Lipmann Institute,Jena,Germany;7.Philipps-Universit?t Marburg, Laboratorium für Zellbiologie,Marburg,Germany |
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| Abstract: | Background Alternative splicing (AS) involving tandem acceptors that are separated by three nucleotides (NAGNAG) is an evolutionarily widespread class of AS, which is well studied in Homo sapiens (human) and Mus musculus (mouse). It has also been shown to be common in the model seed plants Arabidopsis thaliana and Oryza sativa (rice). In one of the first studies involving sequence-based prediction of AS in plants, we performed a genome-wide identification and characterization of NAGNAG AS in the model plant Physcomitrella patens, a moss. |
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