Solution structure of agelenin, an insecticidal peptide isolated from the spider Agelena opulenta, and its structural similarities to insect-specific calcium channel inhibitors |
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Authors: | Yamaji Nahoko Sugase Kenji Nakajima Terumi Miki Takafumi Wakamori Minoru Mori Yasuo Iwashita Takashi |
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Affiliation: | Suntory Institute for Bioorganic Research, 1-1-1 Wakayamadai, Shimamoto-Cho, Mishima-Gun, Osaka 618-8503, Japan. |
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Abstract: | Agelenin, isolated from the Agelenidae spider Agelena opulenta, is a peptide composed of 35 amino acids. We determined the three-dimensional structure of agelenin using two-dimensional NMR spectroscopy. The structure is composed of a short antiparallel beta-sheet and four beta-turns, which are stabilized by three disulfide bonds. Agelenin has characteristic residues, Phe9, Ser28 and Arg33, which are arranged similarly to the pharmacophore of the insect channel inhibitor, omega-atracotoxin-Hv1a. These observations suggest that agelenin and omega-atracotoxin-Hv1a bind to insect calcium channels in a similar manner. We also suggest that another mode of action may operate in the channel inhibition by omega-agatoxin-IVA and omega-atracotoxin-Hv2a. |
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Keywords: | ICK, inhibitor cystine knot NMR, nuclear magnetic resonance DQF-COSY, double-quantum-filtered correlation spectroscopy TOCSY, total correlation spectroscopy NOESY, nuclear Overhauser effect spectroscopy H-D exchange, hydrogen-deuterium exchange PD50, 50% paralytic dose RMSD, root-mean-square deviation ω-Aga-IVA, ω-agatoxin-IVA ω-ACTX-Hv1a, ω-atracotoxin-Hv1a ω-ACTX-Hv2a, ω-atracotoxin-Hv2a |
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