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分子动力学模拟与分子生物力学
引用本文:吕守芹,龙勉.分子动力学模拟与分子生物力学[J].生物物理学报,2012(1):6-14.
作者姓名:吕守芹  龙勉
作者单位:中国科学院力学研究所微重力重点实验室;中国科学院力学研究所生物力学与生物工程中心
基金项目:国家自然科学基金项目(30730032,11072251)~~
摘    要:生物大分子的微观结构动力学决定其生物学功能,其力学-化学耦合规律是分子生物力学的重点关注方向。分子动力学模拟是耦合生物大分子力学-化学性质微观结构动力学基础的有效手段,其结果可用于预测结构-功能关系、指导实验设计和诠释实验结果。本文简要介绍了分子动力学模拟的方法学特点、基本工作原理及其在分子生物力学中的应用,并展望了未来可能的发展方向和应用前景。

关 键 词:分子动力学模拟  分子生物力学  微观结构动力学  结构-功能关系

Molecular Dynamics Simulation and Molecular Biomechanics
LU Shouqin,LONG Mian.Molecular Dynamics Simulation and Molecular Biomechanics[J].Acta Biophysica Sinica,2012(1):6-14.
Authors:LU Shouqin  LONG Mian
Institution:1,2 1.Key Laboratory of Microgravity,Institute of Mechanics,Chinese Academy of Sciences,Beijing 100190,China; 2.Center of Biomechanics and Bioengineering,Institute of Mechanics,Chinese Academy of Sciences,Beijing 100190,China This work was supported by grants from the National Natural Science Foundation of China(30730032,11072251)
Abstract:Micro-structural dynamics of biomolecules governs their biological functions.Mechano-chemical coupling is a key issue in molecular biomechanics.Molecular dynamics simulation(MDS) is an effective approach to coordinate the biomolecular micro-structural dynamics with their mechanical and chemical features.The outcomes provide the bases in predicting the structure-function relationship,optimizing the experimental design,and interpreting the measured data.This mini-review briefly introduces the MDS approach,the working principle,and the biological significance in molecular biomechanics,and proposes the prospects of future development and potential applications.
Keywords:Molecular dynamics simulation  Molecular biomechanics  Micro-structural dynamics  Structure-function relationship
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