The Gaggle: An open-source software system for integrating bioinformatics software and data sources |
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Authors: | Paul T Shannon David J Reiss Richard Bonneau Nitin S Baliga |
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Institution: | (1) Institute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA;(2) Department of Biology, New York University, 100 Washington Square E, New York, NY 10003, USA |
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Abstract: | Background Systems biologists work with many kinds of data, from many different sources, using a variety of software tools. Each of these
tools typically excels at one type of analysis, such as of microarrays, of metabolic networks and of predicted protein structure.
A crucial challenge is to combine the capabilities of these (and other forthcoming) data resources and tools to create a data
exploration and analysis environment that does justice to the variety and complexity of systems biology data sets. A solution
to this problem should recognize that data types, formats and software in this high throughput age of biology are constantly
changing. |
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