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Towards Decoding the Sequence-Based Grammar Governing the Functions of Intrinsically Disordered Protein Regions
Institution:1. Laboratory of Structural Dynamics, Stability and Folding of Proteins, Institute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia;2. Peter the Great St. Petersburg Polytechnic University, Department of Biophysics, Polytechnicheskaya Av. 29, St. Petersburg 195251, Russia;3. Department of Molecular Medicine and USF Health Byrd Alzheimer''s Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL 33612, USA;4. Analiza, Inc., 3615 Superior Avenue, Cleveland, OH 44114, USA;1. Department of Oncology and Pediatrics, Georgetown University, 3970 Reservoir Road Northwest, Washington, DC 20057, USA;2. Molecular Medicine, The Hospital for Sick Children, Toronto M5G 0A4, Canada;3. Department of Biochemistry, University of Toronto, Toronto M5G 1X8, Canada;4. Department of Chemistry, Georgetown University, Washington, DC 20057, USA
Abstract:A substantial portion of the proteome consists of intrinsically disordered regions (IDRs) that do not fold into well-defined 3D structures yet perform numerous biological functions and are associated with a broad range of diseases. It has been a long-standing enigma how different IDRs successfully execute their specific functions. Further putting a spotlight on IDRs are recent discoveries of functionally relevant biomolecular assemblies, which in some cases form through liquid-liquid phase separation. At the molecular level, the formation of biomolecular assemblies is largely driven by weak, multivalent, but selective IDR-IDR interactions. Emerging experimental and computational studies suggest that the primary amino acid sequences of IDRs encode a variety of their interaction behaviors. In this review, we focus on findings and insights that connect sequence-derived features of IDRs to their conformations, propensities to form biomolecular assemblies, selectivity of interaction partners, functions in the context of physiology and disease, and regulation of function. We also discuss directions of future research to facilitate establishing a comprehensive sequence-function paradigm that will eventually allow prediction of selective interactions and specificity of function mediated by IDRs.
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