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On the Structural Diversity and Individuality of Polymorphic Amyloid Protein Assemblies
Institution:1. Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
Abstract:The prediction of highly ordered three-dimensional structures of amyloid protein fibrils from the amino acid sequences of their monomeric self-assembly precursors constitutes a challenging and unresolved aspect of the classical protein folding problem. Because of the polymorphic nature of amyloid assembly whereby polypeptide chains of identical amino acid sequences under identical conditions are capable of self-assembly into a spectrum of different fibril structures, the prediction of amyloid structures from an amino acid sequence requires a detailed and holistic understanding of its assembly free energy landscape. The full extent of the structure space accessible to the cross-β molecular architecture of amyloid must also be resolved. Here, we review the current understanding of the diversity and the individuality of amyloid structures, and how the polymorphic landscape of amyloid links to biology and disease phenotypes. We present a comprehensive review of structural models of amyloid fibrils derived by cryo-EM, ssNMR and AFM to date, and discuss the challenges ahead for resolving the structural basis and the biological consequences of polymorphic amyloid assemblies.
Keywords:amyloid  fibril structure  polymorphism  folding/misfolding  protein aggregation  3D"}  {"#name":"keyword"  "$":{"id":"k0035"}  "$$":[{"#name":"text"  "_":"three-dimensional  Å"}  {"#name":"keyword"  "$":{"id":"k0045"}  "$$":[{"#name":"text"  "_":"ångström  AD"}  {"#name":"keyword"  "$":{"id":"k0055"}  "$$":[{"#name":"text"  "_":"Alzheimer’s disease  AFM"}  {"#name":"keyword"  "$":{"id":"k0065"}  "$$":[{"#name":"text"  "_":"atomic force microscopy  AI"}  {"#name":"keyword"  "$":{"id":"k0075"}  "$$":[{"#name":"text"  "_":"artificial intelligence  AL"}  {"#name":"keyword"  "$":{"id":"k0085"}  "$$":[{"#name":"text"  "_":"amyloid light chain  amyloid β peptide fragment  amino acid residues 1-40  amyloid β protein fragment  amino acid residues 1-42  CASP"}  {"#name":"keyword"  "$":{"id":"k0115"}  "$$":[{"#name":"text"  "_":"Critical Assessment of protein Structure Prediction  CASP14"}  {"#name":"keyword"  "$":{"id":"k0125"}  "$$":[{"#name":"text"  "_":"14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction  CBD"}  {"#name":"keyword"  "$":{"id":"k0135"}  "$$":[{"#name":"text"  "_":"corticobasal degeneration  Cryo-EM"}  {"#name":"keyword"  "$":{"id":"k0145"}  "$$":[{"#name":"text"  "_":"cryogenic electron microscopy  dGAE"}  {"#name":"keyword"  "$":{"id":"k0155"}  "$$":[{"#name":"text"  "_":"tau protein fragment  amino acid residues 297-391  EM"}  {"#name":"keyword"  "$":{"id":"k0165"}  "$$":[{"#name":"text"  "_":"electron microscopy  EMDB"}  {"#name":"keyword"  "$":{"id":"k0175"}  "$$":[{"#name":"text"  "_":"The Electron Microscopy Data Bank  IAPP"}  {"#name":"keyword"  "$":{"id":"k0185"}  "$$":[{"#name":"text"  "_":"islet amyloid polypeptide  microED"}  {"#name":"keyword"  "$":{"id":"k0195"}  "$$":[{"#name":"text"  "_":"microcrystal electron diffraction  PDB"}  {"#name":"keyword"  "$":{"id":"k0205"}  "$$":[{"#name":"text"  "_":"The Protein Data Bank  PTMs"}  {"#name":"keyword"  "$":{"id":"k0215"}  "$$":[{"#name":"text"  "_":"post-translational modifications  RCSB"}  {"#name":"keyword"  "$":{"id":"k0225"}  "$$":[{"#name":"text"  "_":"Research Collaboratory for Structural Bioinformatics  ssNMR"}  {"#name":"keyword"  "$":{"id":"k0235"}  "$$":[{"#name":"text"  "_":"solid-state nuclear magnetic resonance
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