CGH-Plotter: MATLAB toolbox for CGH-data analysis |
| |
| Authors: | Autio Reija Hautaniemi Sampsa Kauraniemi Päivikki Yli-Harja Olli Astola Jaakko Wolf Maija Kallioniemi Anne |
| |
| Affiliation: | Institute of Signal Processing, Tampere University of Technology, 33101 Finland. |
| |
| Abstract: | CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate. |
| |
| Keywords: | |
| 本文献已被 PubMed Oxford 等数据库收录！ |
