Simulated 18O kinetic isotope effects in enzymatic hydrolysis of guanosine triphosphate |
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Authors: | A. V. Nemukhin M. S. Shadrina B. L. Grigorenko X. Du |
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Affiliation: | (1) Dept. Chemistry, University of California Irvine School of Physical Sciences, Irvine, CA 92697-2025, 1102, Natural Sciences II, USA;(2) Dept. Chemistry, University of Tennessee, 552 Buehler Hall, Knoxville, TN 37996-1600, USA;(3) Dept. Chemistry, Technical University of Lodz Inst. Applied Radiation Chemistry, Zeromskiego 116, 90-924 Lodz, Poland |
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Abstract: | We compare the computed on the base of quantum mechanical-molecular mechanical (QM/MM) modeling kinetic isotope effects (KIEs) for a series of the 18O-labeled substrates in enzymatic hydrolysis of guanosine triphosphate (GTP) with those measured experimentally. Following the quantitative structure-activity relationship concept, we introduce the correlation between KIEs and structure of substrates with the help of a labeling index, which also aids better imaging of presentation of both experimental and theoretical data. An evident correlation of the computed and measured KIEs provides support to the predominantly dissociative-type reaction mechanism of enzymatic GTP hydrolysis predicted in QM/MM simulations. |
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