Mechanistic characterization of the thioredoxin system in the removal of hydrogen peroxide |
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| Affiliation: | 1. Biology Division, GVK Biosciences Pvt. Ltd., Hyderabad 500076, Andhra Pradesh, India;2. VINS BIO, Kothur Mandal, Mahaboobnagar District 509325, Andhra Pradesh, India;3. Centre for Biotechnology, Institute of Science and Technology, Jawaharlal Nehru Technological University Hyderabad, 500085 Hyderabad, Andhra Pradesh, India;3. Department of Biochemistry and Biophysics, Stockholm University 10691 Stockholm, Sweden and;4. Laboratory of Developmental Neurobiology, Rockefeller University, New York, New York 10065;3. Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720;;4. Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720;;5. OB/GYN Department, University of California San Francisco-Sandler-Moore Mass Spectrometry Core Facility, University of California, San Francisco, California 94143;;6. Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720;;12. Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee 37996;;8. Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831;;9. Department of Plant and Microbial Biology, University of California, Berkeley, California 94720;;10. Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720;1. Department of Chemistry, The University of Alabama, Tuscaloosa, AL 35487-0336, USA;2. Division of Hematology, Department of Internal Medicine, University of Texas Health Science Center, Houston, TX 77030, USA;2. University Hospital and Medical Faculty, Eberhard Karls University, Tübingen Hoppe-Seyler-Str. 3, Tübingen 72076, Germany |
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| Abstract: | The thioredoxin system, which consists of a family of proteins, including thioredoxin (Trx), peroxiredoxin (Prx), and thioredoxin reductase (TrxR), plays a critical role in the defense against oxidative stress by removing harmful hydrogen peroxide (H2O2). Specifically, Trx donates electrons to Prx to remove H2O2 and then TrxR maintains the reduced Trx concentration with NADPH as the cofactor. Despite a great deal of kinetic information gathered on the removal of H2O2 by the Trx system from various sources/species, a mechanistic understanding of the associated enzymes is still not available. We address this issue by developing a thermodynamically consistent mathematical model of the Trx system which entails mechanistic details and provides quantitative insights into the kinetics of the TrxR and Prx enzymes. Consistent with experimental studies, the model analyses of the available data show that both enzymes operate by a ping-pong mechanism. The proposed mechanism for TrxR, which incorporates substrate inhibition by NADPH and intermediate protonation states, well describes the available data and accurately predicts the bell-shaped behavior of the effect of pH on the TrxR activity. Most importantly, the model also predicts the inhibitory effects of the reaction products (NADP+ and Trx(SH)2) on the TrxR activity for which suitable experimental data are not available. The model analyses of the available data on the kinetics of Prx from mammalian sources reveal that Prx operates at very low H2O2 concentrations compared to their human parasite counterparts. Furthermore, the model is able to predict the dynamic overoxidation of Prx at high H2O2 concentrations, consistent with the available data. The integrated Prx–TrxR model simulations well describe the NADPH and H2O2 degradation dynamics and also show that the coupling of TrxR- and Prx-dependent reduction of H2O2 allowed ultrasensitive changes in the Trx concentration in response to changes in the TrxR concentration at high Prx concentrations. Thus, the model of this sort is very useful for integration into computational H2O2 degradation models to identify its role in physiological and pathophysiological functions. |
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| Keywords: | Mathematical model Enzyme kinetics Redox biology Hydrogen peroxide Thioredoxin system ROS scavenging |
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