Isolation of inhibitory RNA aptamers against severe acute respiratory syndrome (SARS) coronavirus NTPase/Helicase |
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Authors: | Jang Kyoung Jin Lee Na-Ra Yeo Woon-Seok Jeong Yong-Joo Kim Dong-Eun |
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Affiliation: | a Department of Biomaterial Control, Dong-Eui University, Busan 614-714, Republic of Korea b Department of Bio and Nanochemistry, Kookmin University, Seoul 136-702, Republic of Korea c Department of Bioscience and Biotechnology, Konkuk University, Seoul 143-701, Republic of Korea |
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Abstract: | Recent outbreak of Severe Acute Respiratory Syndrome (SARS) that caused almost 800 victims requires a development of efficient inhibitor against SARS coronavirus (SCV). In this study, RNA aptamers against SCV NTPase/Helicase (nsP10) were isolated from RNA library containing random sequences of 40 nts using in vitro selection technique. Nucleotide sequences of enriched RNA aptamer pool (ES15 RNA) contain AG-rich conserved sequence of 10-11 nucleotides [AAAGGR(G)GAAG; R, purine base] and/or additional sequence of 5 nucleotides [GAAAG], which mainly reside at the loop region in all the predicted secondary structures. Isolated RNAs were observed to efficiently inhibit double-stranded DNA unwinding activity of the helicase by up to ∼85% with an IC50 value of 1.2 nM but show a slight effect on ATPase activity of the protein in the presence of cofactor, poly (rU). These results suggest that the pool of selected aptamers might be potentially useful as anti-SCV agents. |
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Keywords: | SARS coronavirus nsP10 NTPase/Helicase RNA aptamer SELEX |
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