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Searching the protein sequence database
Authors:Bruce C Orcutt  Winona C Barker
Institution:(1) National Biomedical Research Foundation, Georgetown University Medical Center, 20007 Washington, D.C., U.S.A.
Abstract:As the volume of protein sequence data grows, rapid methods for searching the protein sequence database become of primary importance. Rigorous comparison of sequences is obtained with the well-known dynamic programming algorithms. However, these algorithms are not rapid enough to use for routinely searching the entire database. In this paper we discuss some methods that can be used for rapid searches.
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