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Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure
Authors:A Pardi  M Billeter  K Wüthrich
Institution:Institut für Molekularbiologie und Biophysik Eidgenössische Technische Hochschule ETH-Hönggerberg, CH-8093 Zürich, Switzerland
Abstract:The vicinal amide proton-C alpha proton spin-spin coupling constants, JHN alpha, in the globular protein basic pancreatic trypsin inhibitor (BPTI) have been measured using phase-sensitive correlated spectroscopy at high digital resolution. In conjunction with the crystal structure of BPTI, these data were used to calibrate the correlation between 3JHN alpha and the dihedral angle phi. The resulting "BPTI curve" is 3JHN alpha = 6.4 cos2 theta - 1.4 cos theta + 1.9 (theta = phi - 60 degrees]). It is further shown that measurement of the spin-spin couplings 3JHN alpha presents an independent, reliable method for identification of the location of helical structure in the amino acid sequence of proteins.
Keywords:n  m  r    nuclear magnetic resonance  BPTI  basic pancreatic trypsin inhibitor  NOE  nuclear Overhauser effect  vicinal spin-spin coupling constant between amide proton and α-proton of the same amino acid residue  in Hz  COSY  2-dimensional correlated spectroscopy  p  p  m    parts per million
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