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Conformational Change in the Active Site of Streptococcal Unsaturated Glucuronyl Hydrolase Through Site-Directed Mutagenesis at Asp-115
Authors:Yusuke Nakamichi  Sayoko Oiki  Bunzo Mikami  Kousaku Murata  Wataru Hashimoto
Affiliation:1.Division of Food Science and Biotechnology, Graduate School of Agriculture,Kyoto University,Uji,Japan;2.Division of Applied Life Sciences, Graduate School of Agriculture,Kyoto University,Uji,Japan;3.Laboratory of Supramolecular Crystallography, Institute for Protein Research,Osaka University,Suita,Japan;4.Department of Life Science, Faculty of Science and Engineering,Setsunan University,Neyagawa,Japan
Abstract:Bacterial unsaturated glucuronyl hydrolase (UGL) degrades unsaturated disaccharides generated from mammalian extracellular matrices, glycosaminoglycans, by polysaccharide lyases. Two Asp residues, Asp-115 and Asp-175 of Streptococcus agalactiae UGL (SagUGL), are completely conserved in other bacterial UGLs, one of which (Asp-175 of SagUGL) acts as a general acid and base catalyst. The other Asp (Asp-115 of SagUGL) also affects the enzyme activity, although its role in the enzyme reaction has not been well understood. Here, we show substitution of Asp-115 in SagUGL with Asn caused a conformational change in the active site. Tertiary structures of SagUGL mutants D115N and D115N/K370S with negligible enzyme activity were determined at 2.00 and 1.79 Å resolution, respectively, by X-ray crystallography. The side chain of Asn-115 is drastically shifted in both mutants owing to the interaction with several residues, including Asp-175, by formation of hydrogen bonds. This interaction between Asn-115 and Asp-175 probably prevents the mutants from triggering the enzyme reaction using Asp-175 as an acid catalyst.
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