HoSeqI: automated homologous sequence identification in gene family databases |
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| Authors: | Arigon Anne-Muriel Perrière Guy Gouy Manolo |
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| Affiliation: | Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université Claude-Bernard, Lyon 1, 43 boulevard du 11 Novembre 1918, 69622 Villeurbanne Cedex, France. arigon@biomserv.univ-lyon1.fr |
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| Abstract: | We present a web service allowing to automatically assign sequences to homologous gene families from a set of databases. After identification of the most similar gene family to the query sequence, this sequence is added to the whole alignment and the phylogenetic tree of the family is rebuilt. Thus, the phylogenetic position of the query sequence in its gene family can be easily identified. AVAILABILITY: http://pbil.univ-lyon1.fr/software/HoSeqI/. |
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