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Solid-state NMR spectroscopy of 18.5 kDa myelin basic protein reconstituted with lipid vesicles: Spectroscopic characterisation and spectral assignments of solvent-exposed protein fragments
Authors:Ligang Zhong  Vladimir V. Bamm  Mumdooh A.M. Ahmed  George Harauz  Vladimir Ladizhansky
Affiliation:a Department of Physics, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1
b Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1
c Department of Biophysics Interdepartmental Group, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1
Abstract:Myelin basic protein (MBP, 18.5 kDa isoform) is a peripheral membrane protein that is essential for maintaining the structural integrity of the multilamellar myelin sheath of the central nervous system. Reconstitution of the most abundant 18.5 kDa MBP isoform with lipid vesicles yields an aggregated assembly mimicking the protein's natural environment, but which is not amenable to standard solution NMR spectroscopy. On the other hand, the mobility of MBP in such a system is variable, depends on the local strength of the protein-lipid interaction, and in general is of such a time scale that the dipolar interactions are averaged out. Here, we used a combination of solution and solid-state NMR (ssNMR) approaches: J-coupling-driven polarization transfers were combined with magic angle spinning and high-power decoupling to yield high-resolution spectra of the mobile fragments of 18.5 kDa murine MBP in membrane-associated form. To partially circumvent the problem of short transverse relaxation, we implemented three-dimensional constant-time correlation experiments (NCOCX, NCACX, CONCACX, and CAN(CO)CX) that were able to provide interresidue and intraresidue backbone correlations. These experiments resulted in partial spectral assignments for mobile fragments of the protein. Additional nuclear Overhauser effect spectroscopy (NOESY)-based experiments revealed that the mobile fragments were exposed to solvent and were likely located outside the lipid bilayer, or in its hydrophilic portion. Chemical shift index analysis showed that the fragments were largely disordered under these conditions. These combined approaches are applicable to ssNMR investigations of other peripheral membrane proteins reconstituted with lipids.
Keywords:CARA, computer-aided resonance assignment   CP, cross-polarization   CPMAS, cross-polarization magic angle spinning   CSA, chemical shift anisotropy   CSI, chemical shift index   DMPC, 1,2-dimyristoyl-sn-glycero-3-phosphocholine   DMPG, 1,2-dimyristoyl-sn-glycero-3-[phospho-rac-(1-glycerol)]   ddH2O, distilled, deionised water   EDTA, ethylenediamine tetraacetic acid   EPR, electron paramagnetic resonance   FID, free induction decay   GARP, globally optimised alternating phase rectangular pulses   HEPES, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid   HSQC, heteronuclear single quantum coherence   INEPT, insensitive nuclear enhancement of polarization transfer   LUV, large unilamellar vesicle   MAS, magic angle spinning   MBP, myelin basic protein   NMR, nuclear magnetic resonance   NOE, nuclear Overhauser effect   NOESY, nuclear Overhauser effect spectroscopy   ppm, parts per million   rmMBP, recombinant murine MBP   rpm, revolutions per minute   SDS, sodium dodecyl sulphate   SDSL, site-directed spin labelling   ssNMR, solid-state NMR   TFE-d2, deuterated 2,2,2-trifluoroethanol (CF3-CD2-OH)   TOBSY, total through-bond correlation spectroscopy   TPPI, time-proportional phase incrementation   TPPM, two-pulse phase modulation   Tris-HCl, tris(hydroxymethyl)aminomethane, pH adjusted with HCl   WALTZ, wideband, alternating phase, low-power technique for zero-residual splitting
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