Solid-state NMR spectroscopy of 18.5 kDa myelin basic protein reconstituted with lipid vesicles: Spectroscopic characterisation and spectral assignments of solvent-exposed protein fragments |
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Authors: | Ligang Zhong Vladimir V. Bamm Mumdooh A.M. Ahmed George Harauz Vladimir Ladizhansky |
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Affiliation: | a Department of Physics, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1 b Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1 c Department of Biophysics Interdepartmental Group, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1 |
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Abstract: | Myelin basic protein (MBP, 18.5 kDa isoform) is a peripheral membrane protein that is essential for maintaining the structural integrity of the multilamellar myelin sheath of the central nervous system. Reconstitution of the most abundant 18.5 kDa MBP isoform with lipid vesicles yields an aggregated assembly mimicking the protein's natural environment, but which is not amenable to standard solution NMR spectroscopy. On the other hand, the mobility of MBP in such a system is variable, depends on the local strength of the protein-lipid interaction, and in general is of such a time scale that the dipolar interactions are averaged out. Here, we used a combination of solution and solid-state NMR (ssNMR) approaches: J-coupling-driven polarization transfers were combined with magic angle spinning and high-power decoupling to yield high-resolution spectra of the mobile fragments of 18.5 kDa murine MBP in membrane-associated form. To partially circumvent the problem of short transverse relaxation, we implemented three-dimensional constant-time correlation experiments (NCOCX, NCACX, CONCACX, and CAN(CO)CX) that were able to provide interresidue and intraresidue backbone correlations. These experiments resulted in partial spectral assignments for mobile fragments of the protein. Additional nuclear Overhauser effect spectroscopy (NOESY)-based experiments revealed that the mobile fragments were exposed to solvent and were likely located outside the lipid bilayer, or in its hydrophilic portion. Chemical shift index analysis showed that the fragments were largely disordered under these conditions. These combined approaches are applicable to ssNMR investigations of other peripheral membrane proteins reconstituted with lipids. |
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Keywords: | CARA, computer-aided resonance assignment CP, cross-polarization CPMAS, cross-polarization magic angle spinning CSA, chemical shift anisotropy CSI, chemical shift index DMPC, 1,2-dimyristoyl-sn-glycero-3-phosphocholine DMPG, 1,2-dimyristoyl-sn-glycero-3-[phospho-rac-(1-glycerol)] ddH2O, distilled, deionised water EDTA, ethylenediamine tetraacetic acid EPR, electron paramagnetic resonance FID, free induction decay GARP, globally optimised alternating phase rectangular pulses HEPES, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid HSQC, heteronuclear single quantum coherence INEPT, insensitive nuclear enhancement of polarization transfer LUV, large unilamellar vesicle MAS, magic angle spinning MBP, myelin basic protein NMR, nuclear magnetic resonance NOE, nuclear Overhauser effect NOESY, nuclear Overhauser effect spectroscopy ppm, parts per million rmMBP, recombinant murine MBP rpm, revolutions per minute SDS, sodium dodecyl sulphate SDSL, site-directed spin labelling ssNMR, solid-state NMR TFE-d2, deuterated 2,2,2-trifluoroethanol (CF3-CD2-OH) TOBSY, total through-bond correlation spectroscopy TPPI, time-proportional phase incrementation TPPM, two-pulse phase modulation Tris-HCl, tris(hydroxymethyl)aminomethane, pH adjusted with HCl WALTZ, wideband, alternating phase, low-power technique for zero-residual splitting |
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