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NMR studies on fully hydrated membrane proteins, with emphasis on bacteriorhodopsin as a typical and prototype membrane protein
Authors:Hazime Saitô  ,Akira Naito
Affiliation:a Center for Quantum Life Sciences, Hiroshima University, Higashi-Hiroshima 739-8526, Japan
b Department of Life Science, Himeji Institute of Technology, Kamigori 678-1297, Japan
c Graduate School of Engineering, Yokohama National University, Hodogaya-ku, Yokohama 240-8501, Japan
Abstract:The 3D structures or dynamic feature of fully hydrated membrane proteins are very important at ambient temperature, in relation to understanding their biological activities, although their data, especially from the flexible portions such as surface regions, are unavailable from X-ray diffraction or cryoelectron microscope at low temperature. In contrast, high-resolution solid-state NMR spectroscopy has proved to be a very convenient alternative means to be able to reveal their dynamic structures. To clarify this problem, we describe here how we are able to reveal such structures and dynamic features, based on intrinsic probes from high-resolution solid-state NMR studies on bacteriorhodopsin (bR) as a typical membrane protein in 2D crystal, regenerated preparation in lipid bilayer and detergents. It turned out that their dynamic features are substantially altered upon their environments where bR is present. We further review NMR applications to study structure and dynamics of a variety of membrane proteins, including sensory rhodopsin, rhodopsin, photoreaction centers, diacylglycerol kinases, etc.
Keywords:bR, bacteriorhodopsin   bO, bacterioopsin   Bchl, bacteriochlorophylls   CP-MAS, cross polarization-magic angle spinning   2D, two dimensional   3D, three dimensional   DARR, dipolar-assisted rotational resonance   DD-MAS, a single-pulse 13C dipolar decoupled-magic angle spinning   DGK, diacylglycerol kinase   DM, N-dodecylmaltoside   DMPC, 1,2-dimyristoyl-sn-glycero-3-phosphocholine   DOPC, 1,2-dioleoyl-sn-glycero-3-phosphocholine   DPPC, 1,2-dipalmitoyl- sn-glycero-3-phosphocholine   DSS, 2,2-dimethylsilapentane-5-sulfonic acid   EC, extracellular   GPCRs, G-protein-coupled receptors   HSQC, heteronuclear single quantum coherence   HETCOR, heteronuclear correlation   HFIP, hexafluoroisopropanol   IP3,   smallcaps"  >d-myo-inositol 1,4,5-trisphosphate   LH2, light-harvesting complex   MAS, magic angle spinning   MOVS, magnetically oriented vesicle system   NMR, nuclear magnetic resonance   NOE, nuclear Overhauser effect   OTG, octyl ß  -glucoside   pHtrII, pharaonis cognate transducer   PM, purple membrane   PISA, polarity index slant angle   PISEMA, polarization inversion spin exchange at the magic angle   PH, pleckstrin homology   PIP2, phosphatidylinositol 4,5-bisphosphate   PLC, phospholipase C   POPC, 1-palmitoyl-2-oleyl-sn-glycero-3-phosphocholine   pR, phoborhodopsin   ppR, pharaonis phoborhodopsin   RC, reaction center   REDOR, rotational echo double resonance   RFDR, radiofrequency-driven recoupling   Rho, rhodopsin   SDS, sodium dodecyl sulfate   SH3, Src homology 3   sR I, sensory rhodopsin I   sR II, sensory rhodopsin II   TET, trifluoroethylthio   TM, transmembrane   TMS, tetramethylsilane   TX-100, Triton X-100   TN-101, Triton N-101   TROSY, transverse relaxation-optimized NMR spectroscopy
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