NMR studies on fully hydrated membrane proteins, with emphasis on bacteriorhodopsin as a typical and prototype membrane protein |
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Authors: | Hazime Saitô ,Akira Naito |
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Affiliation: | a Center for Quantum Life Sciences, Hiroshima University, Higashi-Hiroshima 739-8526, Japan b Department of Life Science, Himeji Institute of Technology, Kamigori 678-1297, Japan c Graduate School of Engineering, Yokohama National University, Hodogaya-ku, Yokohama 240-8501, Japan |
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Abstract: | The 3D structures or dynamic feature of fully hydrated membrane proteins are very important at ambient temperature, in relation to understanding their biological activities, although their data, especially from the flexible portions such as surface regions, are unavailable from X-ray diffraction or cryoelectron microscope at low temperature. In contrast, high-resolution solid-state NMR spectroscopy has proved to be a very convenient alternative means to be able to reveal their dynamic structures. To clarify this problem, we describe here how we are able to reveal such structures and dynamic features, based on intrinsic probes from high-resolution solid-state NMR studies on bacteriorhodopsin (bR) as a typical membrane protein in 2D crystal, regenerated preparation in lipid bilayer and detergents. It turned out that their dynamic features are substantially altered upon their environments where bR is present. We further review NMR applications to study structure and dynamics of a variety of membrane proteins, including sensory rhodopsin, rhodopsin, photoreaction centers, diacylglycerol kinases, etc. |
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Keywords: | bR, bacteriorhodopsin bO, bacterioopsin Bchl, bacteriochlorophylls CP-MAS, cross polarization-magic angle spinning 2D, two dimensional 3D, three dimensional DARR, dipolar-assisted rotational resonance DD-MAS, a single-pulse 13C dipolar decoupled-magic angle spinning DGK, diacylglycerol kinase DM, N-dodecylmaltoside DMPC, 1,2-dimyristoyl-sn-glycero-3-phosphocholine DOPC, 1,2-dioleoyl-sn-glycero-3-phosphocholine DPPC, 1,2-dipalmitoyl- sn-glycero-3-phosphocholine DSS, 2,2-dimethylsilapentane-5-sulfonic acid EC, extracellular GPCRs, G-protein-coupled receptors HSQC, heteronuclear single quantum coherence HETCOR, heteronuclear correlation HFIP, hexafluoroisopropanol IP3, smallcaps" >d-myo-inositol 1,4,5-trisphosphate LH2, light-harvesting complex MAS, magic angle spinning MOVS, magnetically oriented vesicle system NMR, nuclear magnetic resonance NOE, nuclear Overhauser effect OTG, octyl ß -glucoside pHtrII, pharaonis cognate transducer PM, purple membrane PISA, polarity index slant angle PISEMA, polarization inversion spin exchange at the magic angle PH, pleckstrin homology PIP2, phosphatidylinositol 4,5-bisphosphate PLC, phospholipase C POPC, 1-palmitoyl-2-oleyl-sn-glycero-3-phosphocholine pR, phoborhodopsin ppR, pharaonis phoborhodopsin RC, reaction center REDOR, rotational echo double resonance RFDR, radiofrequency-driven recoupling Rho, rhodopsin SDS, sodium dodecyl sulfate SH3, Src homology 3 sR I, sensory rhodopsin I sR II, sensory rhodopsin II TET, trifluoroethylthio TM, transmembrane TMS, tetramethylsilane TX-100, Triton X-100 TN-101, Triton N-101 TROSY, transverse relaxation-optimized NMR spectroscopy |
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